- San Juan (city, Argentina) - the capital of San Juan (province, Argentina)
- San Juan (province, Argentina) - in the Cuyo region
- San Juan (Guatemala) (San Juan La Laguna) - a town on Lake Atitlán
- San Juan del Sur - a port on the Pacific coast
- San Juan del Norte - a port on the mouth of the Rio San Juan, ironically a bit to the South of San Juan del Sur
- Rio San Juan department - named for the eponymous river, covering much of the south of the country
- San Juan (Batangas), a town in eastern Batangas.
- San Juan (Metro Manila), commonly known as San Juan City
- San Juan (Siquijor), a popular tourist area in the small island province of Siquijor
- San Juan - the capital and largest city
- Old San Juan (Viejo San Juan) - see San Juan/Old San Juan
- San Juan (New Mexico)
- San Juan (Texas)
- San Juan Capistrano - a city in Orange County, Southern California
- San Juan County (Colorado)
- San Juan County (New Mexico)
- San Juan County (Utah)
- San Juan Islands - a region in Washington (state)
- San Juan Island - the largest island of the San Juan Islands
- San Juan County (Washington) (which has no article of its own)
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